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Andrea  Bild

Andrea Bild

Selected Publications

McQuerry JA, Chang JT, Bowtell DDL, Cohen A, Bild AH, Mechanisms and clinical implications of tumor heterogeneity and convergence on recurrent phenotypes. J Mol Med (Berl) 2017 Sep 4;:

Rahman M, MacNeil SM, Jenkins DF, Shrestha G, Wyatt SR, McQuerry JA, Piccolo SR, Heiser LM, Gray JW, Johnson WE, Bild AH, Activity of distinct growth factor receptor network components in breast tumors uncovers two biologically relevant subtypes. Genome Med 2017 Apr 26;9(1):40

Lam S, Mandrekar SJ, Gesthalter Y, Allen Ziegler KL, Seisler DK, Midthun DE, Mao JT, Aubry MC, McWilliams A, Sin DD, Shaipanich T, Liu G, Johnson E, Bild A, Lenburg ME, Ionescu DN, Mayo J, Yi JE, Tazelaar H, Harmsen WS, Smith J, Spira AE, Beane J, Limburg, A Randomized Phase IIb Trial of myo-Inositol in Smokers with Bronchial Dysplasia. Cancer Prev Res (Phila) 2016 Dec;9(12):906-914

Shrestha G, MacNeil SM, McQuerry JA, Jenkins DF, Sharma S, Bild AH, The value of genomics in dissecting the RAS-network and in guiding therapeutics for RAS-driven cancers. Semin Cell Dev Biol 2016 Oct;58:108-17

Piccolo SR, Hoffman LM, Conner T, Shrestha G, Cohen AL, Marks JR, Neumayer LA, Agarwal CA, Beckerle MC, Andrulis IL, Spira AE, Moos PJ, Buys SS, Johnson WE, Bild AH, Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility. Mol Syst Biol 2016 Mar 10;12(3):860

Piccolo SR, Andrulis IL, Cohen AL, Conner T, Moos PJ, Spira AE, Buys SS, Johnson WE, Bild AH, Gene-expression patterns in peripheral blood classify familial breast cancer susceptibility. BMC Med Genomics 2015 Nov 4;8:72

Rahman M, Jackson LK, Johnson WE, Li DY, Bild AH, Piccolo SR, Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results. Bioinformatics 2015 Nov 15;31(22):3666-72

Shen Y, Rahman M, Piccolo SR, Gusenleitner D, El-Chaar NN, Cheng L, Monti S, Bild AH, Johnson WE, ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways. Bioinformatics 2015 Jun 1;31(11):1745-53

MacNeil SM, Johnson WE, Li DY, Piccolo SR, Bild AH, Inferring pathway dysregulation in cancers from multiple types of omic data. Genome Med 2015;7(1):61

El-Chaar NN, Piccolo SR, Boucher KM, Cohen AL, Chang JT, Moos PJ, Bild AH, Genomic classification of the RAS network identifies a personalized treatment strategy for lung cancer. Mol Oncol 2014 Oct;8(7):1339-54

Bild AH, Chang JT, Johnson WE, Piccolo SR, A field guide to genomics research. PLoS Biol 2014 Jan;12(1):e1001744

Piccolo SR, Withers MR, Francis OE, Bild AH, Johnson WE, Multiplatform single-sample estimates of transcriptional activation. Proc Natl Acad Sci U S A 2013 Oct 29;110(44):17778-83

Cohen AL, Piccolo SR, Cheng L, Soldi R, Han B, Johnson WE, Bild AH, Genomic pathway analysis reveals that EZH2 and HDAC4 represent mutually exclusive epigenetic pathways across human cancers. BMC Med Genomics 2013 Sep 30;6:35

Soldi R, Cohen AL, Cheng L, Sun Y, Moos PJ, Bild AH, A genomic approach to predict synergistic combinations for breast cancer treatment. Pharmacogenomics J 2013 Feb;13(1):94-104

Piccolo SR, Sun Y, Campbell JD, Lenburg ME, Bild AH, Johnson WE, A single-sample microarray normalization method to facilitate personalized-medicine workflows. Genomics 2012 Dec;100(6):337-44

Beane J, Cheng L, Soldi R, Zhang X, Liu G, Anderlind C, Lenburg ME, Spira A, Bild AH, SIRT1 Pathway Dysregulation in the Smoke-Exposed Airway Epithelium and Lung Tumor Tissue. Cancer Res 2012 Nov 15;72(22):5702-11

Poerschke RL, Franklin MR, Bild AH, Moos PJ, Major differences among chemopreventive organoselenocompounds in the sustained elevation of cytoprotective genes. J Biochem Mol Toxicol 2012 Sep;26(9):344-53

Cohen AL, Soldi R, Zhang H, Gustafson AM, Wilcox R, Welm BE, Chang JT, Johnson E, Spira A, Jeffrey SS, Bild AH, A pharmacogenomic method for individualized prediction of drug sensitivity. Mol Syst Biol 2011 Jul 19;7:513

Bild AH, Parker JS, Gustafson AM, Acharya CR, Hoadley KA, Anders C, Marcom PK, Carey LA, Potti A, Nevins JR, Perou CM, An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer. Breast Cancer Res 2009;11(4):R55